Checking Job Status

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bjobs

The LSF command for checking job status is bjobs. Just running it by itself should show any jobs you have that are currently running or pending:

[cjh@ghpcc06 bowtietest]$ bjobs
JOBID   USER    STAT  QUEUE      FROM_HOST   EXEC_HOST   JOB_NAME   SUBMIT_TIME
592572  cjh     PEND  priority   ghpcc06                 *ietest[1] Jul 16 12:50
592572  cjh     PEND  priority   ghpcc06                 *ietest[2] Jul 16 12:50
592572  cjh     PEND  priority   ghpcc06                 *ietest[3] Jul 16 12:50
592574  cjh     RUN   priority   ghpcc06     12*c05b02   *etest[24] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c05b15   *etest[29] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b03   *etest[14] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b03   *etest[15] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b03   *etest[16] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b03   *etest[17] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b02   *etest[20] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b02   *etest[21] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b02   *etest[22] Jul 16 12:51
592574  cjh     RUN   priority   ghpcc06     12*c04b02   *etest[23] Jul 16 12:51

Job Details

If you want more details on the status of a particular job, you can run bjobs with the "-l" option and the job number, e.g.:

[cjh@ghpcc06 bowtietest]$ bjobs -l 592578

Job <592578>, Job Name <bowtietest>, User <cjh>, Project <default>, Status <DON
                     E>, Queue <priority>, Command <#!/bin/bash;#BSUB -n 12;#BS
                     UB -R rusage[mem=1024];#BSUB -R span[hosts=1];#BSUB -J bow
                     tietest;#BSUB -q priority;#BSUB -m c12 c13; #BSUB -o "/hom
                     e/cjh/proj/bowtietest/%J_%I.out";#BSUB -e "/home/cjh/proj/
                     bowtietest/%J_%I.err";#BSUB -u "chris.hull@umassmed.edu";
                     module load bowtie/1.0.0;cd /home/cjh/proj/bowtietest;h=`h
                     ostname`;bowtie -S -q -p 12 -a --best -v 2 -m 1 --strata m
                     m10 reads.fastq > $h;module unload bowtie/1.0.0>, Share gr
                     oup charged </SHARED_TOP/worcester/umw_rc/cjh>
Wed Jul 16 12:55:41: Submitted from host <ghpcc06>, CWD <$HOME/proj/bowtietest>
                     , 12 Processors Requested, Requested Resources < rusage[me
                     m=1024] span[hosts=1]>, Specified Hosts <c12>;

 CPULIMIT
 720.0 min of c12b10

 RUNLIMIT
 60.0 min of c12b10

 CORELIMIT MEMLIMIT
      0 M       1 G
Wed Jul 16 12:55:42: Started on 12 Hosts/Processors <12*c12b10>, Execution Home
                      </home/cjh>, Execution CWD </home/cjh/proj/bowtietest>;
Wed Jul 16 12:55:43: Done successfully. The CPU time used is 2.1 seconds.

 SCHEDULING PARAMETERS:
           r15s   r1m  r15m   ut      pg    io   ls    it    tmp    swp    mem
 loadSched   -    1.0    -     -       -     -    -     -     -      -      -
 loadStop    -     -     -     -       -     -    -     -     -      -      -

          adapter_windows     poe nrt_windows   ngpus gpushared gpuexcl_thrd
 loadSched             -       -           -       -         -            -
 loadStop              -       -           -       -         -            -

          gpuprohibited gpuexcl_proc gpumode0 gputemp0 gpuecc0 gpumode1
 loadSched           -            -        -        -       -        -
 loadStop            -            -        -        -       -        -

          gputemp1 gpuecc1 gpumode2 gputemp2 gpuecc2 gpumode3 gputemp3 gpuecc3
 loadSched      -       -        -        -       -        -        -       -
 loadStop       -       -        -        -       -        -        -       -

 RESOURCE REQUIREMENT DETAILS:
 Combined: select[type == any] order[r15s:pg] rusage[mem=1024.00] span[hosts=1]

 Effective: select[type == any] order[r15s:pg] rusage[mem=1024.00] span[hosts=1